linux学习100篇25: linux -R包安装--Seurat

R包安装比数据分析难多了

(base) root@BC-25-at-66-181:~# R

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> library(Seurat)
Error in library(Seurat) : there is no package called 'Seurat'
> install.packages("Seurat")
Installing package into '/usr/local/lib/R/site-library'
(as 'lib' is unspecified)
also installing the dependencies 'RSpectra', 'uwot'

trying URL 'https://cloud.r-project.org/src/contrib/RSpectra_0.16-0.tar.gz'
Content type 'application/x-gzip' length 125821 bytes (122 KB)
==================================================
downloaded 122 KB

trying URL 'https://cloud.r-project.org/src/contrib/uwot_0.1.10.tar.gz'
Content type 'application/x-gzip' length 96150 bytes (93 KB)
==================================================
downloaded 93 KB

trying URL 'https://cloud.r-project.org/src/contrib/Seurat_4.0.2.tar.gz'
Content type 'application/x-gzip' length 1456048 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

ERROR: failed to lock directory '/usr/local/lib/R/site-library' for modifying
Try removing '/usr/local/lib/R/site-library/00LOCK-RSpectra'
ERROR: dependency 'RSpectra' is not available for package 'uwot'
* removing '/usr/local/lib/R/site-library/uwot'
ERROR: dependency 'uwot' is not available for package 'Seurat'
* removing '/usr/local/lib/R/site-library/Seurat'

The downloaded source packages are in
    '/tmp/RtmphMJsXH/downloaded_packages'
Warning messages:
1: In install.packages("Seurat") :
  installation of package 'RSpectra' had non-zero exit status
2: In install.packages("Seurat") :
  installation of package 'uwot' had non-zero exit status
3: In install.packages("Seurat") :
  installation of package 'Seurat' had non-zero exit status

那就首先去/usr/local/lib/R/site-library/00LOCK-RSpectra

把00LOCK-RSpectra删掉
把RSpectra和uwot这两个依赖包安装上去 然后再装Seurat就成功了

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