将pandas数据框转换为NumPy数组

本文翻译自:Convert pandas dataframe to NumPy array

I am interested in knowing how to convert a pandas dataframe into a NumPy array. 我对知道如何将熊猫数据框转换为NumPy数组感兴趣。

dataframe: 数据框:

import numpy as np
import pandas as pd

index = [1, 2, 3, 4, 5, 6, 7]
a = [np.nan, np.nan, np.nan, 0.1, 0.1, 0.1, 0.1]
b = [0.2, np.nan, 0.2, 0.2, 0.2, np.nan, np.nan]
c = [np.nan, 0.5, 0.5, np.nan, 0.5, 0.5, np.nan]
df = pd.DataFrame({'A': a, 'B': b, 'C': c}, index=index)
df = df.rename_axis('ID')

gives

label   A    B    C
ID                                 
1   NaN  0.2  NaN
2   NaN  NaN  0.5
3   NaN  0.2  0.5
4   0.1  0.2  NaN
5   0.1  0.2  0.5
6   0.1  NaN  0.5
7   0.1  NaN  NaN

I would like to convert this to a NumPy array, as so: 我想将其转换为NumPy数组,如下所示:

array([[ nan,  0.2,  nan],
       [ nan,  nan,  0.5],
       [ nan,  0.2,  0.5],
       [ 0.1,  0.2,  nan],
       [ 0.1,  0.2,  0.5],
       [ 0.1,  nan,  0.5],
       [ 0.1,  nan,  nan]])

How can I do this? 我怎样才能做到这一点?


As a bonus, is it possible to preserve the dtypes, like this? 另外,是否可以像这样保留dtype?

array([[ 1, nan,  0.2,  nan],
       [ 2, nan,  nan,  0.5],
       [ 3, nan,  0.2,  0.5],
       [ 4, 0.1,  0.2,  nan],
       [ 5, 0.1,  0.2,  0.5],
       [ 6, 0.1,  nan,  0.5],
       [ 7, 0.1,  nan,  nan]],
     dtype=[('ID', '

or similar? 或类似的?


#1楼

参考:https://stackoom.com/question/tKk6/将pandas数据框转换为NumPy数组


#2楼

You can use the to_records method, but have to play around a bit with the dtypes if they are not what you want from the get go. 您可以使用to_records方法,但是如果dtype不是您一开始就不想要的类型,则必须对其进行一些操作。 In my case, having copied your DF from a string, the index type is string (represented by an object dtype in pandas): 就我而言,从字符串复制了DF,索引类型为字符串(由pandas中的dtype object表示):

In [102]: df
Out[102]: 
label    A    B    C
ID                  
1      NaN  0.2  NaN
2      NaN  NaN  0.5
3      NaN  0.2  0.5
4      0.1  0.2  NaN
5      0.1  0.2  0.5
6      0.1  NaN  0.5
7      0.1  NaN  NaN

In [103]: df.index.dtype
Out[103]: dtype('object')
In [104]: df.to_records()
Out[104]: 
rec.array([(1, nan, 0.2, nan), (2, nan, nan, 0.5), (3, nan, 0.2, 0.5),
       (4, 0.1, 0.2, nan), (5, 0.1, 0.2, 0.5), (6, 0.1, nan, 0.5),
       (7, 0.1, nan, nan)], 
      dtype=[('index', '|O8'), ('A', '

Converting the recarray dtype does not work for me, but one can do this in Pandas already: 转换recarray dtype对我不起作用,但是已经可以在Pandas中做到这一点:

In [109]: df.index = df.index.astype('i8')
In [111]: df.to_records().view([('ID', '

Note that Pandas does not set the name of the index properly (to ID ) in the exported record array (a bug?), so we profit from the type conversion to also correct for that. 请注意,Pandas在导出的记录数组中没有正确设置索引名称(至ID )(错误?),因此我们可以从类型转换中受益,也可以对此进行更正。

At the moment Pandas has only 8-byte integers, i8 , and floats, f8 (see this issue ). 目前,Pandas只有8个字节的整数i8和浮点数f8 (请参阅此问题 )。


#3楼

I would just chain the DataFrame.reset_index() and DataFrame.values functions to get the Numpy representation of the dataframe, including the index: 我只需要链接DataFrame.reset_index()和DataFrame.values函数来获得数据帧的Numpy表示,包括索引:

In [8]: df
Out[8]: 
          A         B         C
0 -0.982726  0.150726  0.691625
1  0.617297 -0.471879  0.505547
2  0.417123 -1.356803 -1.013499
3 -0.166363 -0.957758  1.178659
4 -0.164103  0.074516 -0.674325
5 -0.340169 -0.293698  1.231791
6 -1.062825  0.556273  1.508058
7  0.959610  0.247539  0.091333

[8 rows x 3 columns]

In [9]: df.reset_index().values
Out[9]:
array([[ 0.        , -0.98272574,  0.150726  ,  0.69162512],
       [ 1.        ,  0.61729734, -0.47187926,  0.50554728],
       [ 2.        ,  0.4171228 , -1.35680324, -1.01349922],
       [ 3.        , -0.16636303, -0.95775849,  1.17865945],
       [ 4.        , -0.16410334,  0.0745164 , -0.67432474],
       [ 5.        , -0.34016865, -0.29369841,  1.23179064],
       [ 6.        , -1.06282542,  0.55627285,  1.50805754],
       [ 7.        ,  0.95961001,  0.24753911,  0.09133339]])

To get the dtypes we'd need to transform this ndarray into a structured array using view : 为了获得dtypes,我们需要使用view将此ndarray转换为结构化数组:

In [10]: df.reset_index().values.ravel().view(dtype=[('index', int), ('A', float), ('B', float), ('C', float)])
Out[10]:
array([( 0, -0.98272574,  0.150726  ,  0.69162512),
       ( 1,  0.61729734, -0.47187926,  0.50554728),
       ( 2,  0.4171228 , -1.35680324, -1.01349922),
       ( 3, -0.16636303, -0.95775849,  1.17865945),
       ( 4, -0.16410334,  0.0745164 , -0.67432474),
       ( 5, -0.34016865, -0.29369841,  1.23179064),
       ( 6, -1.06282542,  0.55627285,  1.50805754),
       ( 7,  0.95961001,  0.24753911,  0.09133339),
       dtype=[('index', '

#4楼

Note : The .as_matrix() method used in this answer is deprecated. 注意 :不.as_matrix()使用此答案中的.as_matrix()方法。 Pandas 0.23.4 warns: 熊猫0.23.4警告:

Method .as_matrix will be removed in a future version. 方法.as_matrix将在以后的版本中删除。 Use .values instead. 请改用.values。


Pandas has something built in... 熊猫内置一些东西...

numpy_matrix = df.as_matrix()

gives

array([[nan, 0.2, nan],
       [nan, nan, 0.5],
       [nan, 0.2, 0.5],
       [0.1, 0.2, nan],
       [0.1, 0.2, 0.5],
       [0.1, nan, 0.5],
       [0.1, nan, nan]])

#5楼

Here is my approach to making a structure array from a pandas DataFrame. 这是我从pandas DataFrame制作结构数组的方法。

Create the data frame 创建数据框

import pandas as pd
import numpy as np
import six

NaN = float('nan')
ID = [1, 2, 3, 4, 5, 6, 7]
A = [NaN, NaN, NaN, 0.1, 0.1, 0.1, 0.1]
B = [0.2, NaN, 0.2, 0.2, 0.2, NaN, NaN]
C = [NaN, 0.5, 0.5, NaN, 0.5, 0.5, NaN]
columns = {'A':A, 'B':B, 'C':C}
df = pd.DataFrame(columns, index=ID)
df.index.name = 'ID'
print(df)

      A    B    C
ID               
1   NaN  0.2  NaN
2   NaN  NaN  0.5
3   NaN  0.2  0.5
4   0.1  0.2  NaN
5   0.1  0.2  0.5
6   0.1  NaN  0.5
7   0.1  NaN  NaN

Define function to make a numpy structure array (not a record array) from a pandas DataFrame. 定义函数以从pandas DataFrame中创建一个numpy结构数组(而不是记录数组)。

def df_to_sarray(df):
    """
    Convert a pandas DataFrame object to a numpy structured array.
    This is functionally equivalent to but more efficient than
    np.array(df.to_array())

    :param df: the data frame to convert
    :return: a numpy structured array representation of df
    """

    v = df.values
    cols = df.columns

    if six.PY2:  # python 2 needs .encode() but 3 does not
        types = [(cols[i].encode(), df[k].dtype.type) for (i, k) in enumerate(cols)]
    else:
        types = [(cols[i], df[k].dtype.type) for (i, k) in enumerate(cols)]
    dtype = np.dtype(types)
    z = np.zeros(v.shape[0], dtype)
    for (i, k) in enumerate(z.dtype.names):
        z[k] = v[:, i]
    return z

Use reset_index to make a new data frame that includes the index as part of its data. 使用reset_index可以创建一个新数据框,其中将索引作为其数据的一部分。 Convert that data frame to a structure array. 将该数据帧转换为结构数组。

sa = df_to_sarray(df.reset_index())
sa

array([(1L, nan, 0.2, nan), (2L, nan, nan, 0.5), (3L, nan, 0.2, 0.5),
       (4L, 0.1, 0.2, nan), (5L, 0.1, 0.2, 0.5), (6L, 0.1, nan, 0.5),
       (7L, 0.1, nan, nan)], 
      dtype=[('ID', '

EDIT: Updated df_to_sarray to avoid error calling .encode() with python 3. Thanks to Joseph Garvin and halcyon for their comment and solution. 编辑:更新df_to_sarray以避免错误调用.encode()与Python 3.感谢约瑟夫·加尔文和宁静为他们的意见和解决方案。


#6楼

Further to meteore's answer, I found the code 除了陨石的答案,我找到了代码

df.index = df.index.astype('i8')

doesn't work for me. 对我不起作用。 So I put my code here for the convenience of others stuck with this issue. 因此,我将代码放在这里,以方便陷入此问题的其他人。

city_cluster_df = pd.read_csv(text_filepath, encoding='utf-8')
# the field 'city_en' is a string, when converted to Numpy array, it will be an object
city_cluster_arr = city_cluster_df[['city_en','lat','lon','cluster','cluster_filtered']].to_records()
descr=city_cluster_arr.dtype.descr
# change the field 'city_en' to string type (the index for 'city_en' here is 1 because before the field is the row index of dataframe)
descr[1]=(descr[1][0], "S20")
newArr=city_cluster_arr.astype(np.dtype(descr))

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